Annotation of co-expression genes

PH01000073G0330's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT3G49900 : 1.30E-61
Blast annotation: Phototropic-responsive NPH3 family protein

2.Location

Scaffold: PH01000073
Strand: -

RegionStartEnd
gene185761191049
mRNA185761191049
exon185761186990
exon188114188617
exon190595190667
exon190795191049
CDS186148186990
CDS188114188617
CDS190595190667
CDS190795190982

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000056HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
nucleus,
transition metal ion binding,
acyl-[acyl-carrier-protein] desaturase activity,
fatty acid metabolic process,
lipid biosynthetic process,
sequence-specific DNA binding,
DNA binding,
sequence-specific DNA binding transcription factor activity,
fatty acid biosynthetic process,
YABBY Transcription_Regulator(from PlantTFDB)
C2C2-YABBY Transcription_Regulator(from iTAK)
lipase activity,
Rho GDP-dissociation inhibitor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03000.13NPH3222280

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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