PH01000074G1000's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT1G78140 : 3.80E-48
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000074
Strand: -
| Region | Start | End |
| gene | 670553 | 674573 |
| mRNA | 670553 | 674573 |
| exon | 670553 | 671041 |
| exon | 671515 | 671622 |
| exon | 672227 | 672338 |
| exon | 672526 | 672716 |
| exon | 674419 | 674573 |
| CDS | 670967 | 671041 |
| CDS | 671515 | 671622 |
| CDS | 672227 | 672338 |
| CDS | 672526 | 672716 |
| CDS | 674419 | 674523 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000415 | SOS_response DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08241.11 | Methyltransf_11 | 53 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.