PH01000075G0900's details annotation
1.Annotation
ICBR annotation: homeobox domain containing protein, expressed
Blast result AT5G11270 : 5.20E-50
Blast annotation: overexpressor of cationic peroxidase 3
2.Location
Scaffold: PH01000075
Strand: +
| Region | Start | End |
| gene | 654551 | 657211 |
| mRNA | 654551 | 657211 |
| exon | 654551 | 654928 |
| exon | 655423 | 655785 |
| exon | 655947 | 656246 |
| exon | 656381 | 657211 |
| CDS | 654761 | 654928 |
| CDS | 655423 | 655785 |
| CDS | 655947 | 656246 |
| CDS | 656381 | 656527 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 257 | 305 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.