Annotation of co-expression genes

PH01000075G1740's details annotation

1.Annotation

ICBR annotation: glycosyltransferase family protein, putative, expressed

Blast result AT5G15050 : 2.00E-138
Blast annotation: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

2.Location

Scaffold: PH01000075
Strand: +

RegionStartEnd
gene11425991149015
mRNA11425991149015
exon11425991143506
exon11441941144269
exon11443451144460
exon11470281149015
CDS11431281143506
CDS11441941144269
CDS11443451144460
CDS11470281147542

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000472Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02485.20Branch15274

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfateprotein xylosyltransferase [EC:2.4.2.26]ko00532K00771
Glycosaminoglycan biosynthesis - heparan sulfate / heparinprotein xylosyltransferase [EC:2.4.2.26]ko00534K00771

10.Gene Ontology

GO AccessionGO Annotation
GO:0008375acetylglucosaminyltransferase activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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