PH01000075G1820's details annotation
1.Annotation
ICBR annotation: RNA polymerase Rpc34 subunit family protein, expressed
Blast result AT5G23710 : 9.10E-32
Blast annotation: DNA binding;DNA-directed RNA polymerases
2.Location
Scaffold: PH01000075
Strand: -
| Region | Start | End |
| gene | 1218625 | 1221161 |
| mRNA | 1218625 | 1221161 |
| exon | 1218625 | 1219604 |
| exon | 1219722 | 1221161 |
| CDS | 1219323 | 1219604 |
| CDS | 1219722 | 1219970 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05158.11 | RNA_pol_Rpc34 | 2 | 81 |
| PF05158.11 | RNA_pol_Rpc34 | 93 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | DNA-directed RNA polymerase III subunit RPC6[EC:2.7.7.6] | ko00230 | K03025 |
| Pyrimidine metabolism | DNA-directed RNA polymerase III subunit RPC6[EC:2.7.7.6] | ko00240 | K03025 |
| RNA polymerase | DNA-directed RNA polymerase III subunit RPC6[EC:2.7.7.6] | ko03020 | K03025 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003899 | DNA-directed RNA polymerase activity |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.