PH01000076G1060's details annotation
1.Annotation
ICBR annotation: senescence-associated protein, putative, expressed
Blast result AT4G15450 : 3.50E-82
Blast annotation: Senescence/dehydration-associated protein-related
2.Location
Scaffold: PH01000076
Strand: -
| Region | Start | End |
| gene | 620577 | 623685 |
| mRNA | 620577 | 623685 |
| exon | 620577 | 620990 |
| exon | 621094 | 621178 |
| exon | 621352 | 621518 |
| exon | 621629 | 621765 |
| exon | 621851 | 623685 |
| CDS | 620831 | 620990 |
| CDS | 621094 | 621178 |
| CDS | 621352 | 621518 |
| CDS | 621629 | 621765 |
| CDS | 621851 | 622393 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06911.11 | Senescence | 160 | 343 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.