Annotation of co-expression genes

PH01000076G1130's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase, putative, expressed

Blast result AT4G29990 : 4.00E-169
Blast annotation: Leucine-rich repeat transmembrane protein kinase protein

2.Location

Scaffold: PH01000076
Strand: +

RegionStartEnd
gene674634679661
mRNA674634679661
exon674634674850
exon674969675530
exon675612676093
exon676197676335
exon676593676664
exon676753676833
exon677305677321
exon677394677641
exon677847677973
exon678040678108
exon678189678381
exon678460679661
CDS674748674850
CDS674969675530
CDS675612676093
CDS676197676335
CDS676593676664
CDS676753676833
CDS677305677321
CDS677394677641
CDS677847677973
CDS678040678108
CDS678189678381
CDS678460678868

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12819.6Malectin_like39369
PF12799.6LRR_4424462
PF07714.16Pkinase_Tyr526793

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.