Annotation of co-expression genes

PH01000076G1270's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase, putative, expressed

Blast result AT1G51830 : 6.00E-121
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000076
Strand: +

RegionStartEnd
gene739197747643
mRNA739197747643
exon739197739278
exon740174740664
exon741065741200
exon742287742358
exon742437742542
exon742677742797
exon743825744039
exon744434744560
exon745206745274
exon745381745564
exon746084746447
exon747490747643
CDS739244739278
CDS740174740664
CDS741065741200
CDS742287742358
CDS742437742542
CDS742677742797
CDS743825744039
CDS744434744560
CDS745206745274
CDS745381745564
CDS746084746447
CDS747490747546

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12819.6Malectin_like12163
PF00069.24Pkinase367613

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.