PH01000076G1530's details annotation
1.Annotation
ICBR annotation: plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed
Blast result AT5G47210 : 1.40E-28
Blast annotation: Hyaluronan / mRNA binding family
2.Location
Scaffold: PH01000076
Strand: +
| Region | Start | End |
| gene | 878841 | 882826 |
| mRNA | 878841 | 882826 |
| exon | 878841 | 879554 |
| exon | 879911 | 880298 |
| exon | 880393 | 880537 |
| exon | 881652 | 881810 |
| exon | 881898 | 881954 |
| exon | 882541 | 882826 |
| CDS | 879371 | 879554 |
| CDS | 879911 | 880298 |
| CDS | 880393 | 880537 |
| CDS | 881652 | 881810 |
| CDS | 881898 | 881954 |
| CDS | 882541 | 882729 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000537 | Ribosome eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09598.9 | Stm1_N | 1 | 75 |
| PF04774.14 | HABP4_PAI-RBP1 | 155 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.