PH01000077G1670's details annotation
1.Annotation
ICBR annotation: OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT5G36210 : 4.40E-54
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000077
Strand: +
| Region | Start | End |
| gene | 1108498 | 1114850 |
| mRNA | 1108498 | 1114850 |
| exon | 1108498 | 1108914 |
| exon | 1109020 | 1109384 |
| exon | 1111928 | 1112109 |
| exon | 1113676 | 1113780 |
| exon | 1113861 | 1113932 |
| exon | 1114025 | 1114850 |
| CDS | 1108846 | 1108914 |
| CDS | 1109020 | 1109384 |
| CDS | 1111928 | 1112109 |
| CDS | 1113676 | 1113780 |
| CDS | 1113861 | 1113932 |
| CDS | 1114025 | 1114176 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001624 | nuclear pore, ribonucleoside_binding NAC Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase activity, DNA-directed RNA polymerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.