PH01000077G1790's details annotation
1.Annotation
ICBR annotation: OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000077
Strand: -
| Region | Start | End |
| gene | 1190121 | 1198055 |
| mRNA | 1190121 | 1198055 |
| exon | 1190121 | 1191019 |
| exon | 1191102 | 1191296 |
| exon | 1192226 | 1192294 |
| exon | 1192522 | 1192617 |
| exon | 1192694 | 1192768 |
| exon | 1193427 | 1193479 |
| exon | 1194211 | 1194227 |
| exon | 1194280 | 1194357 |
| exon | 1195139 | 1195219 |
| exon | 1195487 | 1195651 |
| exon | 1195711 | 1195843 |
| exon | 1196125 | 1198055 |
| CDS | 1190520 | 1191019 |
| CDS | 1191102 | 1191296 |
| CDS | 1192226 | 1192294 |
| CDS | 1192522 | 1192617 |
| CDS | 1192694 | 1192768 |
| CDS | 1193427 | 1193479 |
| CDS | 1194211 | 1194227 |
| CDS | 1194280 | 1194357 |
| CDS | 1195139 | 1195219 |
| CDS | 1195487 | 1195651 |
| CDS | 1195711 | 1195843 |
| CDS | 1196125 | 1196429 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000078 | RLK-Pelle_LRR-V (from iTAK) RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.