Annotation of co-expression genes

PH01000077G1890's details annotation

1.Annotation

ICBR annotation: pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed

Blast result AT5G08740 : 3.00E-151
Blast annotation: NAD(P)H dehydrogenase C1

2.Location

Scaffold: PH01000077
Strand: +

RegionStartEnd
gene12628251268449
mRNA12628251268449
exon12628251263013
exon12631191263299
exon12638541263947
exon12642901264505
exon12650331265410
exon12654881265564
exon12657151265818
exon12659011266013
exon12674911268096
exon12682291268449
CDS12629381263013
CDS12631191263299
CDS12638541263947
CDS12642901264505
CDS12650331265410
CDS12654881265564
CDS12657151265818
CDS12659011266013
CDS12674911268096
CDS12682291268408

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07992.13Pyr_redox_23321
PF07859.12Abhydrolase_3504602

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016491oxidoreductase activity
GO:0016787hydrolase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.