PH01000078G0060's details annotation
1.Annotation
ICBR annotation: RGH1A, putative, expressed
Blast result AT3G46730 : 3.80E-30
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01000078
Strand: -
| Region | Start | End |
| gene | 40724 | 45055 |
| mRNA | 40724 | 45055 |
| exon | 40724 | 41657 |
| exon | 41822 | 42111 |
| exon | 42554 | 42633 |
| exon | 43568 | 45055 |
| CDS | 40866 | 41657 |
| CDS | 41822 | 42111 |
| CDS | 42554 | 42633 |
| CDS | 43568 | 44373 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001237 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 175 | 334 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.