PH01000078G0450's details annotation
1.Annotation
ICBR annotation: ankyrin repeat domain-containing protein 28, putative, expressed
Blast result AT2G28840 : 2.30E-93
Blast annotation: XB3 ortholog 1 in Arabidopsis thaliana
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 318876 | 321341 |
| mRNA | 318876 | 321341 |
| exon | 318876 | 319317 |
| exon | 319577 | 319698 |
| exon | 320019 | 320126 |
| exon | 320444 | 320702 |
| exon | 320813 | 321341 |
| CDS | 318979 | 319317 |
| CDS | 319577 | 319698 |
| CDS | 320019 | 320126 |
| CDS | 320444 | 320702 |
| CDS | 320813 | 321217 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000411 | transcription, DNA-dependent, nucleus, bHLH Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 121 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.