PH01000078G0550's details annotation
1.Annotation
ICBR annotation: protein kinase APK1A, chloroplast precursor, putative, expressed
Blast result AT2G28930 : 1.00E-141
Blast annotation: protein kinase 1B
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 404206 | 409512 |
| mRNA | 404206 | 409512 |
| exon | 404206 | 406420 |
| exon | 407166 | 407491 |
| exon | 407581 | 407716 |
| exon | 407804 | 407946 |
| exon | 408029 | 408152 |
| exon | 408432 | 409512 |
| CDS | 406357 | 406420 |
| CDS | 407166 | 407491 |
| CDS | 407581 | 407716 |
| CDS | 407804 | 407946 |
| CDS | 408029 | 408152 |
| CDS | 408432 | 408856 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000506 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001437 | RLK-Pelle_C-LEC (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein phosphorylation, |
| coexpression network | CFinderM001757 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 81 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.