Annotation of co-expression genes

PH01000078G1460's details annotation

1.Annotation

ICBR annotation: methionine S-methyltransferase, putative, expressed

Blast result AT5G49810 : 0.00E+00
Blast annotation: methionine S-methyltransferase

2.Location

Scaffold: PH01000078
Strand: +

RegionStartEnd
gene964923975159
mRNA964923975159
exon964923965509
exon966770966963
exon967360967566
exon967656967751
exon968586968774
exon969874970395
exon970704970892
exon971298971432
exon971732972052
exon972230972409
exon972727973692
exon974002975159
CDS965260965509
CDS966770966963
CDS967360967566
CDS967656967751
CDS968586968774
CDS969874970395
CDS970704970892
CDS971298971432
CDS971732972052
CDS972230972409
CDS972727973692
CDS974002974313

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05175.13MTS122172
PF00155.20Aminotran_1_28321165

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Selenocompound metabolismmethionine S-methyltransferase [EC:2.1.1.12]ko00450K08247

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008168methyltransferase activity
GO:0009058biosynthetic process
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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