PH01000078G1590's details annotation
1.Annotation
ICBR annotation: tRNA-splicing endonuclease subunit Sen2, putative, expressed
Blast result AT5G60230 : 7.90E-52
Blast annotation: splicing endonuclease 2
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 1050913 | 1053467 |
| mRNA | 1050913 | 1053467 |
| exon | 1050913 | 1051962 |
| exon | 1053003 | 1053467 |
| CDS | 1051157 | 1051962 |
| CDS | 1053003 | 1053216 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02778.13 | tRNA_int_endo_N | 53 | 115 |
| PF01974.16 | tRNA_int_endo | 128 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000213 | tRNA-intron endonuclease activity |
| GO:0003676 | nucleic acid binding |
| GO:0004518 | nuclease activity |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.