PH01000078G1730's details annotation
1.Annotation
ICBR annotation: AML1, putative, expressed
Blast result AT5G61960 : 8.00E-136
Blast annotation: MEI2-like protein 1
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 1129509 | 1139476 |
| mRNA | 1129509 | 1139476 |
| exon | 1129509 | 1132296 |
| exon | 1132414 | 1132459 |
| exon | 1134049 | 1134366 |
| exon | 1134527 | 1134924 |
| exon | 1135014 | 1135172 |
| exon | 1136412 | 1136528 |
| exon | 1136603 | 1136754 |
| exon | 1136845 | 1136924 |
| exon | 1137014 | 1137409 |
| exon | 1137645 | 1138239 |
| exon | 1138325 | 1138409 |
| exon | 1138500 | 1138568 |
| exon | 1138836 | 1139015 |
| exon | 1139261 | 1139476 |
| CDS | 1132192 | 1132296 |
| CDS | 1132414 | 1132459 |
| CDS | 1134049 | 1134366 |
| CDS | 1134527 | 1134924 |
| CDS | 1135014 | 1135172 |
| CDS | 1136412 | 1136528 |
| CDS | 1136603 | 1136754 |
| CDS | 1136845 | 1136924 |
| CDS | 1137014 | 1137409 |
| CDS | 1137645 | 1138239 |
| CDS | 1138325 | 1138409 |
| CDS | 1138500 | 1138568 |
| CDS | 1138836 | 1139015 |
| CDS | 1139261 | 1139422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 270 | 330 |
| PF00076.21 | RRM_1 | 355 | 419 |
| PF04059.11 | RRM_2 | 778 | 874 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.