PH01000078G2040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G23490 : 1.00E-150
Blast annotation: -
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 1292061 | 1304904 |
| mRNA | 1292061 | 1304904 |
| exon | 1292061 | 1292598 |
| exon | 1292690 | 1292752 |
| exon | 1293380 | 1293735 |
| exon | 1293837 | 1293933 |
| exon | 1294010 | 1294087 |
| exon | 1294166 | 1294225 |
| exon | 1294304 | 1294408 |
| exon | 1294668 | 1294778 |
| exon | 1295344 | 1295385 |
| exon | 1295552 | 1295668 |
| exon | 1295703 | 1295926 |
| exon | 1296389 | 1296672 |
| exon | 1296755 | 1296876 |
| exon | 1296995 | 1297037 |
| exon | 1297155 | 1297246 |
| exon | 1300658 | 1300706 |
| exon | 1300963 | 1301033 |
| exon | 1301125 | 1301244 |
| exon | 1302477 | 1302565 |
| exon | 1303127 | 1303172 |
| exon | 1303407 | 1303518 |
| exon | 1303551 | 1303669 |
| exon | 1304094 | 1304904 |
| CDS | 1292458 | 1292598 |
| CDS | 1292690 | 1292752 |
| CDS | 1293380 | 1293735 |
| CDS | 1293837 | 1293933 |
| CDS | 1294010 | 1294087 |
| CDS | 1294166 | 1294225 |
| CDS | 1294304 | 1294408 |
| CDS | 1294668 | 1294778 |
| CDS | 1295344 | 1295385 |
| CDS | 1295552 | 1295668 |
| CDS | 1295703 | 1295926 |
| CDS | 1296389 | 1296672 |
| CDS | 1296755 | 1296876 |
| CDS | 1296995 | 1297037 |
| CDS | 1297155 | 1297246 |
| CDS | 1300658 | 1300706 |
| CDS | 1300963 | 1301033 |
| CDS | 1301125 | 1301244 |
| CDS | 1302477 | 1302565 |
| CDS | 1303127 | 1303172 |
| CDS | 1303407 | 1303518 |
| CDS | 1303551 | 1303669 |
| CDS | 1304094 | 1304141 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.