PH01000080G1620's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000080
Strand: -
| Region | Start | End |
| gene | 1077423 | 1080118 |
| mRNA | 1077423 | 1080118 |
| exon | 1077423 | 1078085 |
| exon | 1078236 | 1078834 |
| exon | 1079199 | 1080118 |
| CDS | 1077995 | 1078085 |
| CDS | 1078236 | 1078834 |
| CDS | 1079199 | 1079423 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001681 | HB-other Transcription_Regulator(from PlantTFDB) tRNA_3'-trailer_cleavage endoribonuclease activity, producing 5'-phosphomonoesters, regulation of transcription, DNA-dependent, sequence-specific DNA binding, RNA_transport sequence-specific DNA binding transcription factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00149.27 | Metallophos | 43 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.