PH01000080G1770's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G22125 : 0.00E+00
Blast annotation: binding
2.Location
Scaffold: PH01000080
Strand: -
| Region | Start | End |
| gene | 1176987 | 1190435 |
| mRNA | 1176987 | 1190435 |
| exon | 1176987 | 1177512 |
| exon | 1178009 | 1178125 |
| exon | 1178846 | 1179300 |
| exon | 1179639 | 1180197 |
| exon | 1180285 | 1182177 |
| exon | 1183249 | 1186336 |
| exon | 1188163 | 1188230 |
| exon | 1189685 | 1190435 |
| CDS | 1177372 | 1177512 |
| CDS | 1178009 | 1178125 |
| CDS | 1178846 | 1179300 |
| CDS | 1179639 | 1180197 |
| CDS | 1180285 | 1182177 |
| CDS | 1183249 | 1186336 |
| CDS | 1188163 | 1188230 |
| CDS | 1189685 | 1189750 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001296 | CMGC_DYRK-PRP4 (from iTAK) RLK-Pelle_DLSV (from iTAK) recognition of pollen, protein phosphorylation, |
| coexpression network | CFinderM001404 | integral to membrane, CMGC_DYRK-PRP4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00514.22 | Arm | 534 | 573 |
| PF00168.29 | C2 | 2007 | 2103 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.