PH01000081G0490's details annotation
1.Annotation
ICBR annotation: sulfate transporter, putative, expressed
Blast result AT3G51895 : 2.00E-154
Blast annotation: sulfate transporter 3;1
2.Location
Scaffold: PH01000081
Strand: +
| Region | Start | End |
| gene | 335444 | 338340 |
| mRNA | 335444 | 338340 |
| exon | 335444 | 335611 |
| exon | 336175 | 336288 |
| exon | 336393 | 336509 |
| exon | 336684 | 336810 |
| exon | 336902 | 337188 |
| exon | 337284 | 337474 |
| exon | 337573 | 337658 |
| exon | 337849 | 337925 |
| exon | 338039 | 338340 |
| CDS | 335606 | 335611 |
| CDS | 336175 | 336288 |
| CDS | 336393 | 336509 |
| CDS | 336684 | 336810 |
| CDS | 336902 | 337188 |
| CDS | 337284 | 337474 |
| CDS | 337573 | 337658 |
| CDS | 337849 | 337925 |
| CDS | 338039 | 338227 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00916.19 | Sulfate_transp | 4 | 199 |
| PF01740.20 | STAS | 252 | 370 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008272 | sulfate transport |
| GO:0015116 | sulfate transmembrane transporter activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.