PH01000081G0920's details annotation
1.Annotation
ICBR annotation: XS domain containing protein, expressed
Blast result AT3G22430 : 1.40E-81
Blast annotation: -
2.Location
Scaffold: PH01000081
Strand: -
| Region | Start | End |
| gene | 583578 | 590641 |
| mRNA | 583578 | 590641 |
| exon | 583578 | 584726 |
| exon | 585705 | 585821 |
| exon | 585972 | 586279 |
| exon | 588924 | 588967 |
| exon | 589885 | 590214 |
| exon | 590246 | 590641 |
| CDS | 584377 | 584726 |
| CDS | 585705 | 585821 |
| CDS | 585972 | 586279 |
| CDS | 588924 | 588967 |
| CDS | 589885 | 590214 |
| CDS | 590246 | 590491 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000492 | SCY1_SCYL1 (from iTAK) RLK-Pelle_RLCK-IXb (from iTAK) SWI/SNF-BAF60b Transcription_Regulator(from iTAK) protein binding, protein phosphatase type 2A complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03468.13 | XS | 301 | 432 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.