Annotation of co-expression genes

PH01000081G1240's details annotation

1.Annotation

ICBR annotation: aminotransferase, putative, expressed

Blast result AT4G35630 : 3.00E-150
Blast annotation: phosphoserine aminotransferase

2.Location

Scaffold: PH01000081
Strand: -

RegionStartEnd
gene765106766694
mRNA765106766694
exon765106766694
CDS765327766589

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00266.18Aminotran_559408

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Methane metabolismphosphoserine aminotransferase [EC:2.6.1.52]ko00680K00831
277 Glycine, serine and threonine metabolismphosphoserine aminotransferase [EC:2.6.1.52]K00831
Vitamin B6 metabolismphosphoserine aminotransferase [EC:2.6.1.52]ko00750K00831

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004648O-phospho-L-serine:2-oxoglutarate aminotransferase activity
GO:0006564L-serine biosynthetic process
GO:0008152metabolic process
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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