PH01000081G1640's details annotation
1.Annotation
ICBR annotation: la domain containing protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000081
Strand: -
| Region | Start | End |
| gene | 979058 | 982016 |
| mRNA | 979058 | 982016 |
| exon | 979058 | 979749 |
| exon | 979920 | 980026 |
| exon | 980145 | 980298 |
| exon | 980584 | 981098 |
| exon | 981200 | 982016 |
| CDS | 979653 | 979749 |
| CDS | 979920 | 980026 |
| CDS | 980145 | 980298 |
| CDS | 980584 | 981098 |
| CDS | 981200 | 981451 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001208 | TRAF Transcription_Regulator(from iTAK) negative regulation of catalytic activity, identical protein binding, |
| coexpression network | CFinderM001349 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cation-transporting_ATPase_activity cation transport, |
| coexpression network | CFinderM001677 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05383.16 | La | 277 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.