PH01000082G0800's details annotation
1.Annotation
ICBR annotation: CW-type Zinc Finger, putative
Blast result AT3G62900 : 1.00E-104
Blast annotation: CW-type Zinc Finger
2.Location
Scaffold: PH01000082
Strand: +
| Region | Start | End |
| gene | 593582 | 605563 |
| mRNA | 593582 | 605563 |
| exon | 593582 | 593957 |
| exon | 595501 | 595573 |
| exon | 595667 | 595800 |
| exon | 595895 | 596218 |
| exon | 596307 | 597583 |
| exon | 597997 | 598358 |
| exon | 598444 | 599933 |
| exon | 600024 | 600184 |
| exon | 602735 | 602895 |
| exon | 603648 | 603775 |
| exon | 604525 | 605563 |
| CDS | 593766 | 593957 |
| CDS | 595501 | 595573 |
| CDS | 595667 | 595800 |
| CDS | 595895 | 596218 |
| CDS | 596307 | 597583 |
| CDS | 597997 | 598358 |
| CDS | 598444 | 599933 |
| CDS | 600024 | 600184 |
| CDS | 602735 | 602895 |
| CDS | 603648 | 603775 |
| CDS | 604525 | 604728 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001017 | calcium-dependent cysteine-type endopeptidase activity, mechanically-gated_ion_channel_activity RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07496.14 | zf-CW | 633 | 678 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.