PH01000082G1720's details annotation
1.Annotation
ICBR annotation: Os5bglu20 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed
Blast result AT4G22100 : 1.00E-38
Blast annotation: beta glucosidase 2
2.Location
Scaffold: PH01000082
Strand: -
| Region | Start | End |
| gene | 1155113 | 1156432 |
| mRNA | 1155113 | 1156432 |
| exon | 1155113 | 1155413 |
| exon | 1155574 | 1155661 |
| exon | 1155990 | 1156018 |
| exon | 1156084 | 1156432 |
| CDS | 1155185 | 1155413 |
| CDS | 1155574 | 1155661 |
| CDS | 1155990 | 1156018 |
| CDS | 1156084 | 1156286 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000718 | GH1 Glycoside_Hydrolases thylakoid membrane organization, photosystem II, Photosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 7 | 191 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.