PH01000083G0290's details annotation
1.Annotation
ICBR annotation: integral membrane protein DUF6 domain containing protein, expressed
Blast result AT5G47470 : 3.20E-52
Blast annotation: Nodulin MtN21 /EamA-like transporter family protein
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 170976 | 174484 |
| mRNA | 170976 | 174484 |
| exon | 170976 | 171630 |
| exon | 171884 | 172035 |
| exon | 172164 | 172325 |
| exon | 172434 | 172665 |
| exon | 172839 | 172955 |
| exon | 173857 | 174484 |
| CDS | 171609 | 171630 |
| CDS | 171884 | 172035 |
| CDS | 172164 | 172325 |
| CDS | 172434 | 172665 |
| CDS | 172839 | 172955 |
| CDS | 173857 | 174137 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00892.19 | EamA | 25 | 162 |
| PF00892.19 | EamA | 191 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.