PH01000083G0320's details annotation
1.Annotation
ICBR annotation: myb-like DNA-binding domain containing protein, expressed
Blast result AT5G52660 : 3.90E-43
Blast annotation: Homeodomain-like superfamily protein
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 187598 | 192828 |
| mRNA | 187598 | 192828 |
| exon | 187598 | 188075 |
| exon | 188678 | 188737 |
| exon | 189427 | 189536 |
| exon | 190160 | 190222 |
| exon | 190628 | 190726 |
| exon | 190815 | 191013 |
| exon | 191799 | 191856 |
| exon | 192433 | 192828 |
| CDS | 187977 | 188075 |
| CDS | 188678 | 188737 |
| CDS | 189427 | 189536 |
| CDS | 190160 | 190222 |
| CDS | 190628 | 190726 |
| CDS | 190815 | 191013 |
| CDS | 191799 | 191856 |
| CDS | 192433 | 192590 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 36 | 70 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.