PH01000083G0620's details annotation
1.Annotation
ICBR annotation: auxin-induced protein 5NG4, putative, expressed
Blast result AT3G30340 : 1.50E-60
Blast annotation: nodulin MtN21 /EamA-like transporter family protein
2.Location
Scaffold: PH01000083
Strand: +
| Region | Start | End |
| gene | 355610 | 358552 |
| mRNA | 355610 | 358552 |
| exon | 355610 | 355889 |
| exon | 356133 | 356249 |
| exon | 356599 | 357010 |
| exon | 357670 | 357821 |
| exon | 357997 | 358552 |
| CDS | 355699 | 355889 |
| CDS | 356133 | 356249 |
| CDS | 356599 | 357010 |
| CDS | 357670 | 357821 |
| CDS | 357997 | 358141 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00892.19 | EamA | 168 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.