PH01000083G1160's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT5G16840 : 2.10E-51
Blast annotation: binding partner of acd11 1
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 709493 | 713923 |
| mRNA | 709493 | 713923 |
| exon | 709493 | 710855 |
| exon | 711551 | 711634 |
| exon | 712090 | 712165 |
| exon | 712275 | 712378 |
| exon | 713374 | 713923 |
| CDS | 710352 | 710855 |
| CDS | 711551 | 711634 |
| CDS | 712090 | 712165 |
| CDS | 712275 | 712378 |
| CDS | 713374 | 713385 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000006 | CAMK_CDPK (from iTAK) transporter activity, transport, transmembrane transport, polygalacturonase activity, |
| coexpression network | CFinderM000239 | cullin-RING ubiquitin ligase complex, glycogen_phosphorylase_activity protein_binding,_bridging actin filament binding, phosphatidylserine biosynthetic process, |
| coexpression network | CFinderM000817 | riboflavin synthase complex, ubiquitin protein ligase binding, cullin-RING ubiquitin ligase complex, Riboflavin_metabolism riboflavin biosynthetic process, cellular amino acid biosynthetic process, Nucleotide_excision_repair |
| coexpression network | CFinderM001168 | cullin-RING ubiquitin ligase complex, SNF2 Transcription_Regulator(from iTAK) glycogen_phosphorylase_activity Nucleotide_excision_repair Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001279 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Nucleotide_excision_repair Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001280 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism phospholipid transport, |
| coexpression network | CFinderM001281 | phospholipid transport, phosphatidylinositol metabolic process, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system cellular protein metabolic process, Phagosome |
| coexpression network | CFinderM001801 | GH17 Glycoside_Hydrolases phospholipid transport, phosphatidylinositol metabolic process, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RNA_degradation Arginine_and_proline_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.