PH01000083G1500's details annotation
1.Annotation
ICBR annotation: ribosomal protein L13, putative, expressed
Blast result AT3G49010 : 1.20E-91
Blast annotation: breast basic conserved 1
2.Location
Scaffold: PH01000083
Strand: -
| Region | Start | End |
| gene | 932746 | 935722 |
| mRNA | 932746 | 935722 |
| exon | 932746 | 933441 |
| exon | 933537 | 933695 |
| exon | 933839 | 933972 |
| exon | 934774 | 935722 |
| CDS | 933217 | 933441 |
| CDS | 933537 | 933695 |
| CDS | 933839 | 933972 |
| CDS | 934774 | 934882 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000295 | translation, AGC_RSK-2 (from iTAK) CMGC_GSK (from iTAK) Ribosome intracellular, protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01294.17 | Ribosomal_L13e | 7 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L13e | ko03011 | K02873 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.