PH01000083G1630's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT4G19040 : 4.00E-102
Blast annotation: ENHANCED DISEASE RESISTANCE 2
2.Location
Scaffold: PH01000083
Strand: +
| Region | Start | End |
| gene | 1022696 | 1029515 |
| mRNA | 1022696 | 1029515 |
| exon | 1022696 | 1023680 |
| exon | 1024274 | 1024388 |
| exon | 1024482 | 1024547 |
| exon | 1025346 | 1025433 |
| exon | 1025532 | 1025590 |
| exon | 1025943 | 1026008 |
| exon | 1026091 | 1026191 |
| exon | 1026268 | 1026354 |
| exon | 1027098 | 1027162 |
| exon | 1027243 | 1027314 |
| exon | 1027415 | 1027570 |
| exon | 1027737 | 1028122 |
| exon | 1028447 | 1028548 |
| exon | 1029232 | 1029294 |
| exon | 1029377 | 1029515 |
| CDS | 1023262 | 1023680 |
| CDS | 1024274 | 1024388 |
| CDS | 1024482 | 1024547 |
| CDS | 1025346 | 1025433 |
| CDS | 1025532 | 1025590 |
| CDS | 1025943 | 1026008 |
| CDS | 1026091 | 1026191 |
| CDS | 1026268 | 1026354 |
| CDS | 1027098 | 1027162 |
| CDS | 1027243 | 1027314 |
| CDS | 1027415 | 1027570 |
| CDS | 1027737 | 1028122 |
| CDS | 1028447 | 1028548 |
| CDS | 1029232 | 1029294 |
| CDS | 1029377 | 1029433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01852.18 | START | 276 | 413 |
| PF07059.11 | DUF1336 | 560 | 631 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.