PH01000084G0230's details annotation
1.Annotation
ICBR annotation: KH domain-containing protein, putative, expressed
Blast result AT1G51580 : 1.40E-57
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01000084
Strand: +
| Region | Start | End |
| gene | 138903 | 146181 |
| mRNA | 138903 | 146181 |
| exon | 138903 | 139487 |
| exon | 140321 | 140740 |
| exon | 141006 | 141179 |
| exon | 142153 | 142536 |
| exon | 142745 | 142869 |
| exon | 143180 | 143288 |
| exon | 143915 | 146181 |
| CDS | 139041 | 139487 |
| CDS | 140321 | 140740 |
| CDS | 141006 | 141179 |
| CDS | 142153 | 142536 |
| CDS | 142745 | 142869 |
| CDS | 143180 | 143288 |
| CDS | 143915 | 144022 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00013.28 | KH_1 | 116 | 164 |
| PF00013.28 | KH_1 | 239 | 288 |
| PF00013.28 | KH_1 | 323 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.