PH01000084G0300's details annotation
1.Annotation
ICBR annotation: growth regulator related protein, putative, expressed
Blast result AT3G21190 : 3.00E-112
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000084
Strand: -
| Region | Start | End |
| gene | 212277 | 217757 |
| mRNA | 212277 | 217757 |
| exon | 212277 | 212959 |
| exon | 213237 | 213819 |
| exon | 214219 | 214304 |
| exon | 214377 | 214444 |
| exon | 214540 | 214684 |
| exon | 215559 | 217757 |
| CDS | 212681 | 212959 |
| CDS | 213237 | 213819 |
| CDS | 214219 | 214304 |
| CDS | 214377 | 214444 |
| CDS | 214540 | 214684 |
| CDS | 215559 | 215663 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism GT8 GlycosylTransferases DNA metabolic process, cellular metabolic process, Nucleotide_excision_repair Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 106 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.