PH01000084G0750's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G05680 : 2.90E-95
Blast annotation: nuclear pore complex protein-related
2.Location
Scaffold: PH01000084
Strand: +
| Region | Start | End |
| gene | 504012 | 508127 |
| mRNA | 504012 | 508127 |
| exon | 504012 | 505414 |
| exon | 505639 | 505888 |
| exon | 505974 | 508127 |
| CDS | 504494 | 505414 |
| CDS | 505639 | 505888 |
| CDS | 505974 | 506242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001625 | SNF2 Transcription_Regulator(from iTAK) cellular_homeostasis mitochondrial outer membrane, RNA methylation, Homologous_recombination |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.