PH01000084G1370's details annotation
1.Annotation
ICBR annotation: coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
Blast result AT1G03475 : 5.30E-99
Blast annotation: Coproporphyrinogen III oxidase
2.Location
Scaffold: PH01000084
Strand: +
| Region | Start | End |
| gene | 914044 | 916244 |
| mRNA | 914044 | 916244 |
| exon | 914044 | 914878 |
| exon | 915099 | 915174 |
| exon | 915468 | 915562 |
| exon | 915946 | 916029 |
| exon | 916092 | 916244 |
| CDS | 914339 | 914878 |
| CDS | 915099 | 915174 |
| CDS | 915468 | 915562 |
| CDS | 915946 | 916029 |
| CDS | 916092 | 916199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK) Terpenoid_backbone_biosynthesis isopentenyl-diphosphate delta-isomerase activity, coproporphyrinogen oxidase activity, porphyrin-containing compound biosynthetic process, transferase activity, transferring phosphorus-containing groups, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001008 | RLK-Pelle_LRR-Xa (from iTAK) porphobilinogen synthase activity, coproporphyrinogen oxidase activity, tetrapyrrole biosynthetic process, porphyrin-containing compound biosynthetic process, Porphyrin_and_chlorophyll_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01218.17 | Coprogen_oxidas | 82 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004109 | coproporphyrinogen oxidase activity |
| GO:0006779 | porphyrin-containing compound biosynthetic process |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.