PH01000084G1720's details annotation
1.Annotation
ICBR annotation: ent-kaurene synthase, chloroplast precursor, putative, expressed
Blast result AT1G79460 : 0.00E+00
Blast annotation: Terpenoid cyclases/Protein prenyltransferases superfamily protein
2.Location
Scaffold: PH01000084
Strand: +
| Region | Start | End |
| gene | 1164753 | 1170834 |
| mRNA | 1164753 | 1170834 |
| exon | 1164753 | 1165634 |
| exon | 1167068 | 1167353 |
| exon | 1167463 | 1167643 |
| exon | 1167946 | 1168163 |
| exon | 1168247 | 1168367 |
| exon | 1168439 | 1168536 |
| exon | 1168626 | 1168726 |
| exon | 1168918 | 1169030 |
| exon | 1169121 | 1169213 |
| exon | 1169289 | 1169504 |
| exon | 1169592 | 1169733 |
| exon | 1169807 | 1170052 |
| exon | 1170336 | 1170834 |
| CDS | 1165347 | 1165634 |
| CDS | 1167068 | 1167353 |
| CDS | 1167463 | 1167643 |
| CDS | 1167946 | 1168163 |
| CDS | 1168247 | 1168367 |
| CDS | 1168439 | 1168536 |
| CDS | 1168626 | 1168726 |
| CDS | 1168918 | 1169030 |
| CDS | 1169121 | 1169213 |
| CDS | 1169289 | 1169504 |
| CDS | 1169592 | 1169733 |
| CDS | 1169807 | 1170052 |
| CDS | 1170336 | 1170671 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
| coexpression network | CFinderM001785 | transferase activity, transferring pentosyl groups, Nicotinate_and_nicotinamide_metabolism Diterpenoid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01397.20 | Terpene_synth | 277 | 434 |
| PF03936.15 | Terpene_synth_C | 477 | 742 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Diterpenoid biosynthesis | ent-kaurene synthase [EC:4.2.3.19] | ko00904 | K04121 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0008152 | metabolic process |
| GO:0010333 | terpene synthase activity |
| GO:0016829 | lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.