PH01000084G1770's details annotation
1.Annotation
ICBR annotation: coatomer subunit epsilon, putative, expressed
Blast result AT1G30630 : 3.00E-131
Blast annotation: Coatomer epsilon subunit
2.Location
Scaffold: PH01000084
Strand: -
| Region | Start | End |
| gene | 1185915 | 1193726 |
| mRNA | 1185915 | 1193726 |
| exon | 1185915 | 1186901 |
| exon | 1188101 | 1188180 |
| exon | 1188310 | 1188465 |
| exon | 1188569 | 1188660 |
| exon | 1189109 | 1189381 |
| exon | 1189451 | 1189723 |
| exon | 1189793 | 1190099 |
| exon | 1191359 | 1191406 |
| exon | 1193256 | 1193339 |
| exon | 1193428 | 1193726 |
| CDS | 1186808 | 1186901 |
| CDS | 1188101 | 1188180 |
| CDS | 1188310 | 1188465 |
| CDS | 1188569 | 1188660 |
| CDS | 1189109 | 1189381 |
| CDS | 1189451 | 1189723 |
| CDS | 1189793 | 1190099 |
| CDS | 1191359 | 1191406 |
| CDS | 1193256 | 1193339 |
| CDS | 1193428 | 1193589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04733.13 | Coatomer_E | 4 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005515 | protein binding |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER |
| GO:0030126 | COPI vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.