PH01000086G0010's details annotation
1.Annotation
ICBR annotation: calcium-binding protein, putative, expressed
Blast result AT5G47540 : 7.00E-132
Blast annotation: Mo25 family protein
2.Location
Scaffold: PH01000086
Strand: -
| Region | Start | End |
| gene | 13449 | 22964 |
| mRNA | 13449 | 22964 |
| exon | 13449 | 14690 |
| exon | 14892 | 14933 |
| exon | 15161 | 15263 |
| exon | 15355 | 15399 |
| exon | 16549 | 16647 |
| exon | 17364 | 17432 |
| exon | 18615 | 18708 |
| exon | 19408 | 19482 |
| exon | 20347 | 20465 |
| exon | 20602 | 20763 |
| exon | 21619 | 22964 |
| CDS | 14632 | 14690 |
| CDS | 14892 | 14933 |
| CDS | 15161 | 15263 |
| CDS | 15355 | 15399 |
| CDS | 16549 | 16647 |
| CDS | 17364 | 17432 |
| CDS | 18615 | 18708 |
| CDS | 19408 | 19482 |
| CDS | 20347 | 20465 |
| CDS | 20602 | 20763 |
| CDS | 21619 | 21744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08569.10 | Mo25 | 4 | 192 |
| PF08569.10 | Mo25 | 193 | 330 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.