PH01000086G0750's details annotation
1.Annotation
ICBR annotation: transporter-related, putative, expressed
Blast result AT1G21070 : 3.00E-133
Blast annotation: Nucleotide-sugar transporter family protein
2.Location
Scaffold: PH01000086
Strand: +
| Region | Start | End |
| gene | 520380 | 524944 |
| mRNA | 520380 | 524944 |
| exon | 520380 | 521078 |
| exon | 521188 | 521372 |
| exon | 521488 | 521688 |
| exon | 522657 | 522818 |
| exon | 523338 | 524944 |
| CDS | 520949 | 521078 |
| CDS | 521188 | 521372 |
| CDS | 521488 | 521688 |
| CDS | 522657 | 522818 |
| CDS | 523338 | 523700 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 23 | 297 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.