Annotation of co-expression genes

PH01000086G1520's details annotation

1.Annotation

ICBR annotation: UAA transporter family domain containing protein, expressed

Blast result AT4G35335 : 4.00E-127
Blast annotation: Nucleotide-sugar transporter family protein

2.Location

Scaffold: PH01000086
Strand: +

RegionStartEnd
gene10100871017619
mRNA10100871017619
exon10100871010535
exon10118931012107
exon10121911012302
exon10124011012480
exon10125721012647
exon10127361012836
exon10136071013655
exon10137541013795
exon10139121014033
exon10141291014188
exon10142761014324
exon10152731017619
CDS10105091010535
CDS10118931012107
CDS10121911012302
CDS10124011012480
CDS10125721012647
CDS10127361012836
CDS10136071013655
CDS10137541013795
CDS10139121014033
CDS10141291014188
CDS10142761014324
CDS10152731015371

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04142.14Nuc_sug_transp78204
PF04142.14Nuc_sug_transp205342

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000139Golgi membrane
GO:0005338nucleotide-sugar transmembrane transporter activity
GO:0005351sugar:hydrogen symporter activity
GO:0008643carbohydrate transport
GO:0015780nucleotide-sugar transport
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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