PH01000087G0210's details annotation
1.Annotation
ICBR annotation: WD-40 repeat family protein, putative, expressed
Blast result AT3G15470 : 4.80E-41
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000087
Strand: -
| Region | Start | End |
| gene | 135466 | 137430 |
| mRNA | 135466 | 137430 |
| exon | 135466 | 136381 |
| exon | 136623 | 136673 |
| exon | 137338 | 137430 |
| CDS | 135795 | 136381 |
| CDS | 136623 | 136673 |
| CDS | 137338 | 137410 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.