PH01000087G0650's details annotation
1.Annotation
ICBR annotation: OsFBX154 - F-box domain containing protein, expressed
Blast result AT3G19180 : 7.00E-179
Blast annotation: paralog of ARC6
2.Location
Scaffold: PH01000087
Strand: +
| Region | Start | End |
| gene | 431647 | 438534 |
| mRNA | 431647 | 438534 |
| exon | 431647 | 432135 |
| exon | 432471 | 432566 |
| exon | 432690 | 432827 |
| exon | 433413 | 433517 |
| exon | 433617 | 433739 |
| exon | 433819 | 434187 |
| exon | 434275 | 434370 |
| exon | 434407 | 434565 |
| exon | 434856 | 435596 |
| exon | 435688 | 435881 |
| exon | 435975 | 436030 |
| exon | 436570 | 436635 |
| exon | 437142 | 438534 |
| CDS | 431878 | 432135 |
| CDS | 432471 | 432566 |
| CDS | 432690 | 432827 |
| CDS | 433413 | 433517 |
| CDS | 433617 | 433739 |
| CDS | 433819 | 434187 |
| CDS | 434275 | 434370 |
| CDS | 434407 | 434565 |
| CDS | 434856 | 435596 |
| CDS | 435688 | 435881 |
| CDS | 435975 | 436030 |
| CDS | 436570 | 436635 |
| CDS | 437142 | 437329 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13355.5 | DUF4101 | 660 | 779 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.