PH01000087G1250's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G21865 : 4.30E-49
Blast annotation: peroxin 22
2.Location
Scaffold: PH01000087
Strand: -
| Region | Start | End |
| gene | 925116 | 929000 |
| mRNA | 925116 | 929000 |
| exon | 925116 | 926055 |
| exon | 926153 | 926254 |
| exon | 926681 | 926746 |
| exon | 926864 | 926965 |
| exon | 927057 | 927113 |
| exon | 928177 | 928224 |
| exon | 928307 | 928486 |
| exon | 928569 | 929000 |
| CDS | 925957 | 926055 |
| CDS | 926153 | 926254 |
| CDS | 926681 | 926746 |
| CDS | 926864 | 926965 |
| CDS | 927057 | 927113 |
| CDS | 928177 | 928224 |
| CDS | 928307 | 928486 |
| CDS | 928569 | 928676 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001111 | vacuolar proton-transporting V-type ATPase, V1 domain, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) binding, proton-transporting ATPase activity, rotational mechanism, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001593 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, proton-transporting ATPase activity, rotational mechanism, binding, |
| coexpression network | CFinderM001836 | GT66 GlycosylTransferases GT96 GlycosylTransferases oligosaccharyl transferase activity, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.