PH01000087G1590's details annotation
1.Annotation
ICBR annotation: UBX domain-containing protein, putative, expressed
Blast result AT1G14570 : 2.90E-74
Blast annotation: UBX domain-containing protein
2.Location
Scaffold: PH01000087
Strand: -
| Region | Start | End |
| gene | 1133711 | 1139194 |
| mRNA | 1133711 | 1139194 |
| exon | 1133711 | 1134044 |
| exon | 1134181 | 1134324 |
| exon | 1134526 | 1134594 |
| exon | 1134694 | 1134771 |
| exon | 1135268 | 1135430 |
| exon | 1137638 | 1137717 |
| exon | 1138137 | 1139194 |
| CDS | 1133898 | 1134044 |
| CDS | 1134181 | 1134324 |
| CDS | 1134526 | 1134594 |
| CDS | 1134694 | 1134771 |
| CDS | 1135268 | 1135430 |
| CDS | 1137638 | 1137717 |
| CDS | 1138137 | 1138241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000099 | protein dephosphorylation, protein serine/threonine phosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13899.5 | Thioredoxin_7 | 115 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.