PH01000087G1800's details annotation
1.Annotation
ICBR annotation: reticulon domain containing protein, putative, expressed
Blast result AT3G19460 : 2.40E-44
Blast annotation: Reticulon family protein
2.Location
Scaffold: PH01000087
Strand: -
| Region | Start | End |
| gene | 1245275 | 1251723 |
| mRNA | 1245275 | 1251723 |
| exon | 1245275 | 1245630 |
| exon | 1245751 | 1245820 |
| exon | 1246860 | 1246944 |
| exon | 1247950 | 1248130 |
| exon | 1248222 | 1251723 |
| CDS | 1245476 | 1245630 |
| CDS | 1245751 | 1245820 |
| CDS | 1246860 | 1246944 |
| CDS | 1247950 | 1248130 |
| CDS | 1248222 | 1248270 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02453.16 | Reticulon | 17 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.