PH01000088G0190's details annotation
1.Annotation
ICBR annotation: tRNA methyltransferase complex GCD14 subunit, putative, expressed
Blast result AT5G14600 : 4.30E-14
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000088
Strand: -
| Region | Start | End |
| gene | 195858 | 199228 |
| mRNA | 195858 | 199228 |
| exon | 195858 | 196806 |
| exon | 197528 | 199228 |
| CDS | 196547 | 196806 |
| CDS | 197528 | 197753 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08704.9 | GCD14 | 44 | 148 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity |
| GO:0030488 | tRNA methylation |
| GO:0031515 | tRNA (m1A) methyltransferase complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.