PH01000089G0180's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C containing protein, expressed
Blast result AT4G31860 : 1.20E-39
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01000089
Strand: +
| Region | Start | End |
| gene | 141246 | 148369 |
| mRNA | 141246 | 148369 |
| exon | 141246 | 141825 |
| exon | 142464 | 142539 |
| exon | 143144 | 143291 |
| exon | 144723 | 144855 |
| exon | 144975 | 145044 |
| exon | 145699 | 145804 |
| exon | 146002 | 146122 |
| exon | 146620 | 146797 |
| exon | 146881 | 146957 |
| exon | 147041 | 147093 |
| exon | 147569 | 147639 |
| exon | 147741 | 148369 |
| CDS | 141688 | 141825 |
| CDS | 142464 | 142539 |
| CDS | 143144 | 143291 |
| CDS | 144723 | 144855 |
| CDS | 144975 | 145044 |
| CDS | 145699 | 145804 |
| CDS | 146002 | 146122 |
| CDS | 146620 | 146797 |
| CDS | 146881 | 146957 |
| CDS | 147041 | 147093 |
| CDS | 147569 | 147639 |
| CDS | 147741 | 147853 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000004 | RLK-Pelle_LRR-XI-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 149 | 366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.