PH01000089G1550's details annotation
1.Annotation
ICBR annotation: cyclin-dependent kinase G-1, putative, expressed
Blast result AT1G67580 : 3.50E-57
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000089
Strand: -
| Region | Start | End |
| gene | 1113593 | 1116617 |
| mRNA | 1113593 | 1116617 |
| exon | 1113593 | 1114746 |
| exon | 1114846 | 1114952 |
| exon | 1115041 | 1115192 |
| exon | 1115246 | 1115372 |
| exon | 1115418 | 1115553 |
| exon | 1116214 | 1116617 |
| CDS | 1114653 | 1114746 |
| CDS | 1114846 | 1114952 |
| CDS | 1115041 | 1115192 |
| CDS | 1115246 | 1115372 |
| CDS | 1115418 | 1115553 |
| CDS | 1116214 | 1116299 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000785 | CMGC_CDKL-Os (from iTAK) |
| coexpression network | CFinderM000821 | CMGC_CDKL-Os (from iTAK) barrier_septum_assembly |
| coexpression network | CFinderM000974 | CMGC_CDKL-Os (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) Glycerolipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 30 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.